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ku70 protein domain architecture  (InterPro Inc)

 
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    InterPro Inc ku70 protein domain architecture
    Ku70 Protein Domain Architecture, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protein+domain+architectures/pm40131966-135-6-19?v=InterPro+Inc
    Average 90 stars, based on 1 article reviews
    ku70 protein domain architecture - by Bioz Stars, 2026-07
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    Comparison of Sti1 domains and the Sgt2-C cons model. A , multiple sequence alignment of Sgt2-C with STI1 domains (DP1, DP2) from STI1/Hop homologs. Helices are shown based on the Sgt2-C cons model and the Sc Sti1-DP1/2 structures. Species for representative sequences are from S. cerevisiae ( Scer ), S. pombe ( Spom ), C. thermophilum ( Cthe ), C. savignyi ( Csav ), and H. sapiens ( Hsap ). B , Cα ribbon of Sc Sgt2-C cons color-ramped with large hydrophobic sidechains shown as gray sticks (sulfurs in yellow ). C , similar to B for the solution NMR structure of Sti1-DP2 526–582 (PDBID: 2LLW) . D , superposition of the Sgt2-C cons ( blue ) and Sti1-DP2 526–582 ( red ) drawn as cartoons.

    Journal: The Journal of Biological Chemistry

    Article Title: Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2

    doi: 10.1016/j.jbc.2021.100441

    Figure Lengend Snippet: Comparison of Sti1 domains and the Sgt2-C cons model. A , multiple sequence alignment of Sgt2-C with STI1 domains (DP1, DP2) from STI1/Hop homologs. Helices are shown based on the Sgt2-C cons model and the Sc Sti1-DP1/2 structures. Species for representative sequences are from S. cerevisiae ( Scer ), S. pombe ( Spom ), C. thermophilum ( Cthe ), C. savignyi ( Csav ), and H. sapiens ( Hsap ). B , Cα ribbon of Sc Sgt2-C cons color-ramped with large hydrophobic sidechains shown as gray sticks (sulfurs in yellow ). C , similar to B for the solution NMR structure of Sti1-DP2 526–582 (PDBID: 2LLW) . D , superposition of the Sgt2-C cons ( blue ) and Sti1-DP2 526–582 ( red ) drawn as cartoons.

    Article Snippet: A , the domain architectures of proteins with an STI1 domain were obtained initially from InterPro ( ) and then adjusted as discussed in the text.

    Techniques: Comparison, Sequencing

    Various domain structures of STI1 and other helical-hand-containing proteins. A , the domain architectures of proteins with an STI1 domain were obtained initially from InterPro and then adjusted as discussed in the text. Each domain within a protein is colored relative to the key. B , structural comparison of various hydrophobic-binding helical-hand protein complexes. For each figure only relevant domains are included. Upper row , color-ramped cartoon representation with bound helices in purple . Lower row , accessible surface of each protein colored by hydrophobicity again with docked helical clients in purple . In order, the predicted complex of ySgt2-C cons and Sc Sbh2-TMD, DP1 domain from yeast Sti1 with N terminus containing H0 in gray ( Sc Sti1-DP1)(PDBID: 2LLV), human calmodulin ( Hs CALM2) bound to a hydrophobic domain of calcineurin ( Hs PPP3CA) (PDBID: 2JZI), and M domain of SRP54 from Oryctolagus cuniculus ( Oc SRP54-M) and the signal sequence of human transferrin receptor ( Hs TR-TMD) (PDBID: 3JAJ).

    Journal: The Journal of Biological Chemistry

    Article Title: Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2

    doi: 10.1016/j.jbc.2021.100441

    Figure Lengend Snippet: Various domain structures of STI1 and other helical-hand-containing proteins. A , the domain architectures of proteins with an STI1 domain were obtained initially from InterPro and then adjusted as discussed in the text. Each domain within a protein is colored relative to the key. B , structural comparison of various hydrophobic-binding helical-hand protein complexes. For each figure only relevant domains are included. Upper row , color-ramped cartoon representation with bound helices in purple . Lower row , accessible surface of each protein colored by hydrophobicity again with docked helical clients in purple . In order, the predicted complex of ySgt2-C cons and Sc Sbh2-TMD, DP1 domain from yeast Sti1 with N terminus containing H0 in gray ( Sc Sti1-DP1)(PDBID: 2LLV), human calmodulin ( Hs CALM2) bound to a hydrophobic domain of calcineurin ( Hs PPP3CA) (PDBID: 2JZI), and M domain of SRP54 from Oryctolagus cuniculus ( Oc SRP54-M) and the signal sequence of human transferrin receptor ( Hs TR-TMD) (PDBID: 3JAJ).

    Article Snippet: A , the domain architectures of proteins with an STI1 domain were obtained initially from InterPro ( ) and then adjusted as discussed in the text.

    Techniques: Comparison, Binding Assay, Sequencing